PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_05508A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

EIL

Protein Properties

Length: 471aa MW: 52578.5 Da PI: 5.0881

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_05508A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	175.9	4.1e-54	39	164	1	127
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpv 84 eel +rmwkd+++l+r+ker+++l ++a++++ +++ ++qa rkk+sra DgiLkYM+k mevcna+GfvYgiip+kgkpv Oropetium_20150105_05508A 39 EELARRMWKDRVRLRRIKERQQRLA-LQQAELEKLRQKPVSDQALRKKISRAHDGILKYMIKLMEVCNARGFVYGIIPDKGKPV 121 8******************9865.66667************************************************* PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.. CS EIN3 85 egasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqt 127 +gasd++raWWkekv+fd+ngpaai+ky+++n+++++++s + Oropetium_20150105_05508A 122 SGASDNIRAWWKEKVKFDKNGPAAIAKYESENMVAANAQSTGV 164 *********************************99988755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	6.9E-54	39	165	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MEQLAMIATT ELGDSSDLEV EGIQNLNEND VSDEEIEPEE LARRMWKDRV RLRRIKERQQ 60 RLALQQAELE KLRQKPVSDQ ALRKKISRAH DGILKYMIKL MEVCNARGFV YGIIPDKGKP 120 VSGASDNIRA WWKEKVKFDK NGPAAIAKYE SENMVAANAQ STGVKKGRYG ETYNSSNEYD 180 VDGFEDAPLS TSSKDEQDLS PVVQSPEEHA RKKGREMAYK RSNQIVPNKV GTKEQIKTKR 240 ARHNSTVIES EAHRIVDAPE NSRNMIPDMN RQGQLETPVM ANQIVSFNHG DHTTDAFQHR 300 GDAQVQVHLP GTEVNSFGNT QAADATPVST YIGGQHLPYQ NSDITRSKSG NAFPFDATSS 360 LNNLPSSYQS LPPKQSLPLS MMDHHEVPVG TRAPADNSPY SDHMIDGDNP TSVPGDMQQF 420 IDYPFYGEQD KFVGSSFEGL PLDYISISSP IPDINDLLLH EDDLMEYLGT *

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MEQLAMIATT ELGDSSDLEV EGIQNLNEND VSDEEIEPEE LARRMWKDRV RLRRIKERQQ  60
RLALQQAELE KLRQKPVSDQ ALRKKISRAH DGILKYMIKL MEVCNARGFV YGIIPDKGKP  120
VSGASDNIRA WWKEKVKFDK NGPAAIAKYE SENMVAANAQ STGVKKGRYG ETYNSSNEYD  180
VDGFEDAPLS TSSKDEQDLS PVVQSPEEHA RKKGREMAYK RSNQIVPNKV GTKEQIKTKR  240
ARHNSTVIES EAHRIVDAPE NSRNMIPDMN RQGQLETPVM ANQIVSFNHG DHTTDAFQHR  300
GDAQVQVHLP GTEVNSFGNT QAADATPVST YIGGQHLPYQ NSDITRSKSG NAFPFDATSS  360
LNNLPSSYQS LPPKQSLPLS MMDHHEVPVG TRAPADNSPY SDHMIDGDNP TSVPGDMQQF  420
IDYPFYGEQD KFVGSSFEGL PLDYISISSP IPDINDLLLH EDDLMEYLGT *

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00649	PBM	Transfer from LOC_Os09g31400	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001136524.1	1e-138	uncharacterized protein LOC100216639
Refseq	XP_008650967.1	1e-135	PREDICTED: uncharacterized protein LOC100216639 isoform X1
TrEMBL	A0A0A9DKK8	1e-147	A0A0A9DKK8_ARUDO; Uncharacterized protein
STRING	GRMZM2G006752_P02	1e-135	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3720	37	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73730.1	2e-52	ETHYLENE-INSENSITIVE3-like 3

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_05508A